LinearAlignment class

A linear alignment can be represented by one CIGAR string. Describes the mapped position and local alignment of the read to the reference.

Constructors

LinearAlignment()
LinearAlignment.fromJson(Map _json)

Properties

cigar ↔ List<CigarUnit>
Represents the local alignment of this sequence (alignment matches, indels, etc) against the reference.
read / write
mappingQuality ↔ int
The mapping quality of this alignment. Represents how likely the read maps to this position as opposed to other locations. [...]
read / write
position Position
The position of this alignment.
read / write
hashCode → int
The hash code for this object.
read-only, inherited
runtimeType → Type
A representation of the runtime type of the object.
read-only, inherited

Methods

toJson() → Map<String, Object>
noSuchMethod(Invocation invocation) → dynamic
Invoked when a non-existent method or property is accessed.
inherited
toString() → String
Returns a string representation of this object.
inherited

Operators

operator ==(dynamic other) → bool
The equality operator.
inherited