googleapis.genomics.v1 library

Classes

Annotation
An annotation describes a region of reference genome. The value of an annotation may be one of several canonical types, supplemented by arbitrary info tags. An annotation is not inherently associated with a specific sample or individual (though a client could choose to use annotations in this way). Example canonical annotation types are GENE and VARIANT.
AnnotationSet
An annotation set is a logical grouping of annotations that share consistent type information and provenance. Examples of annotation sets include 'all genes from refseq', and 'all variant annotations from ClinVar'.
AnnotationsetsResourceApi
AnnotationsResourceApi
BatchCreateAnnotationsRequest
BatchCreateAnnotationsResponse
Binding
Associates members with a role.
CallSet
A call set is a collection of variant calls, typically for one sample. It belongs to a variant set.
CallsetsResourceApi
CancelOperationRequest
The request message for Operations.CancelOperation.
CigarUnit
A single CIGAR operation.
ClinicalCondition
CodingSequence
ComputeEngine
Describes a Compute Engine resource that is being managed by a running pipeline.
ContainerKilledEvent
An event generated when a container is forcibly terminated by the worker. Currently, this only occurs when the container outlives the timeout specified by the user.
ContainerStartedEvent
An event generated when a container starts.
ContainerStoppedEvent
An event generated when a container exits.
CoverageBucket
A bucket over which read coverage has been precomputed. A bucket corresponds to a specific range of the reference sequence.
Dataset
A Dataset is a collection of genomic data.
DatasetsResourceApi
DelayedEvent
An event generated whenever a resource limitation or transient error delays execution of a pipeline that was otherwise ready to run.
Empty
A generic empty message that you can re-use to avoid defining duplicated empty messages in your APIs. A typical example is to use it as the request or the response type of an API method. For instance: [...]
Entry
Event
Carries information about events that occur during pipeline execution.
Exon
Experiment
ExportReadGroupSetRequest
The read group set export request.
ExportVariantSetRequest
The variant data export request.
Expr
Represents an expression text. Example: [...]
ExternalId
FailedEvent
An event generated when the execution of a pipeline has failed. Note that other events can continue to occur after this event.
GenomicsApi
Uploads, processes, queries, and searches Genomics data in the cloud.
GetIamPolicyRequest
Request message for GetIamPolicy method.
ImportReadGroupSetsRequest
The read group set import request.
ImportReadGroupSetsResponse
The read group set import response.
ImportVariantsRequest
The variant data import request.
ImportVariantsResponse
The variant data import response.
LinearAlignment
A linear alignment can be represented by one CIGAR string. Describes the mapped position and local alignment of the read to the reference.
ListBasesResponse
ListCoverageBucketsResponse
ListDatasetsResponse
The dataset list response.
ListOperationsResponse
The response message for Operations.ListOperations.
MergeVariantsRequest
Operation
This resource represents a long-running operation that is the result of a network API call.
OperationEvent
An event that occurred during an Operation.
OperationMetadata
Metadata describing an Operation.
OperationsResourceApi
Policy
Defines an Identity and Access Management (IAM) policy. It is used to specify access control policies for Cloud Platform resources. [...]
Position
An abstraction for referring to a genomic position, in relation to some already known reference. For now, represents a genomic position as a reference name, a base number on that reference (0-based), and a determination of forward or reverse strand.
Program
PullStartedEvent
An event generated when the worker starts pulling an image.
PullStoppedEvent
An event generated when the worker stops pulling an image.
Range
A 0-based half-open genomic coordinate range for search requests.
Read
A read alignment describes a linear alignment of a string of DNA to a reference sequence, in addition to metadata about the fragment (the molecule of DNA sequenced) and the read (the bases which were read by the sequencer). A read is equivalent to a line in a SAM file. A read belongs to exactly one read group and exactly one read group set. [...]
ReadGroup
A read group is all the data that's processed the same way by the sequencer.
ReadGroupSet
A read group set is a logical collection of read groups, which are collections of reads produced by a sequencer. A read group set typically models reads corresponding to one sample, sequenced one way, and aligned one way. [...]
ReadgroupsetsCoveragebucketsResourceApi
ReadgroupsetsResourceApi
ReadsResourceApi
Reference
A reference is a canonical assembled DNA sequence, intended to act as a reference coordinate space for other genomic annotations. A single reference might represent the human chromosome 1 or mitochandrial DNA, for instance. A reference belongs to one or more reference sets.
ReferenceBound
ReferenceBound records an upper bound for the starting coordinate of variants in a particular reference.
ReferencesBasesResourceApi
ReferenceSet
A reference set is a set of references which typically comprise a reference assembly for a species, such as GRCh38 which is representative of the human genome. A reference set defines a common coordinate space for comparing reference-aligned experimental data. A reference set contains 1 or more references.
ReferencesetsResourceApi
ReferencesResourceApi
RunPipelineResponse
The response to the RunPipeline method, returned in the operation's result field on success.
RuntimeMetadata
Runtime metadata that will be populated in the runtimeMetadata field of the Operation associated with a RunPipeline execution.
SearchAnnotationSetsRequest
SearchAnnotationSetsResponse
SearchAnnotationsRequest
SearchAnnotationsResponse
SearchCallSetsRequest
The call set search request.
SearchCallSetsResponse
The call set search response.
SearchReadGroupSetsRequest
The read group set search request.
SearchReadGroupSetsResponse
The read group set search response.
SearchReadsRequest
The read search request.
SearchReadsResponse
The read search response.
SearchReferenceSetsRequest
SearchReferenceSetsResponse
SearchReferencesRequest
SearchReferencesResponse
SearchVariantSetsRequest
The search variant sets request.
SearchVariantSetsResponse
The search variant sets response.
SearchVariantsRequest
The variant search request.
SearchVariantsResponse
The variant search response.
SetIamPolicyRequest
Request message for SetIamPolicy method.
Status
The Status type defines a logical error model that is suitable for different programming environments, including REST APIs and RPC APIs. It is used by gRPC. The error model is designed to be: [...]
TestIamPermissionsRequest
Request message for TestIamPermissions method.
TestIamPermissionsResponse
Response message for TestIamPermissions method.
Transcript
A transcript represents the assertion that a particular region of the reference genome may be transcribed as RNA.
UndeleteDatasetRequest
UnexpectedExitStatusEvent
An event generated when the execution of a container results in a non-zero exit status that was not otherwise ignored. Execution will continue, but only actions that are flagged as ALWAYS_RUN will be executed. Other actions will be skipped.
Variant
A variant represents a change in DNA sequence relative to a reference sequence. For example, a variant could represent a SNP or an insertion. Variants belong to a variant set. [...]
VariantAnnotation
VariantCall
A call represents the determination of genotype with respect to a particular variant. It may include associated information such as quality and phasing. For example, a call might assign a probability of 0.32 to the occurrence of a SNP named rs1234 in a call set with the name NA12345.
VariantSet
A variant set is a collection of call sets and variants. It contains summary statistics of those contents. A variant set belongs to a dataset.
VariantSetMetadata
Metadata describes a single piece of variant call metadata. These data include a top level key and either a single value string (value) or a list of key-value pairs (info.) Value and info are mutually exclusive.
VariantsetsResourceApi
VariantsResourceApi
WorkerAssignedEvent
An event generated after a worker VM has been assigned to run the pipeline.
WorkerReleasedEvent
An event generated when the worker VM that was assigned to the pipeline has been released (deleted).

Constants

USER_AGENT → const String
'dart-api-client genomics/v1'

Exceptions / Errors

ApiRequestError
Represents a general error reported by the API endpoint.
DetailedApiRequestError
Represents a specific error reported by the API endpoint.